This directory contains compressed multiple alignments of the
following assemblies to the mouse genome (mm5, May 2004):
- rat (rn3, Jun. 2003)
- human (hg17, May 2004)
- dog (canFam1, Jul. 2004)
- chicken (galGal2, Feb. 2004)
Files included in this directory:
- chr*.maf.gz files: each contain all the alignments to that
particular mouse chromosome.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm5/multiz5way. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the dog and chicken
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
chr1.maf.gz 2004-08-03 11:30 155M
chr1_random.maf.gz 2004-08-03 11:56 803K
chr2.maf.gz 2004-08-03 12:01 158M
chr2_random.maf.gz 2004-08-03 12:01 5.3M
chr3.maf.gz 2004-08-03 12:04 124M
chr3_random.maf.gz 2004-08-03 12:04 1.4M
chr4.maf.gz 2004-08-03 12:08 125M
chr4_random.maf.gz 2004-08-03 12:08 5.3M
chr5.maf.gz 2004-08-03 12:11 118M
chr5_random.maf.gz 2004-08-03 12:11 1.4M
chr6.maf.gz 2004-08-03 12:15 120M
chr6_random.maf.gz 2004-08-03 12:15 858K
chr7.maf.gz 2004-08-03 12:18 101M
chr7_random.maf.gz 2004-08-03 12:18 3.7M
chr8.maf.gz 2004-08-03 12:21 103M
chr8_random.maf.gz 2004-08-03 12:21 808K
chr9.maf.gz 2004-08-03 12:23 105M
chr9_random.maf.gz 2004-08-03 12:23 382K
chr10.maf.gz 2004-08-03 11:33 105M
chr10_random.maf.gz 2004-08-03 11:33 267K
chr11.maf.gz 2004-08-03 11:36 107M
chr12.maf.gz 2004-08-03 11:39 94M
chr12_random.maf.gz 2004-08-03 11:39 1.2M
chr13.maf.gz 2004-08-03 11:42 91M
chr13_random.maf.gz 2004-08-03 11:42 1.0M
chr14.maf.gz 2004-08-03 11:45 95M
chr14_random.maf.gz 2004-08-03 11:45 1.1M
chr15.maf.gz 2004-08-03 11:48 83M
chr15_random.maf.gz 2004-08-03 11:48 358K
chr16.maf.gz 2004-08-03 11:50 80M
chr16_random.maf.gz 2004-08-03 11:50 774K
chr17.maf.gz 2004-08-03 11:52 71M
chr17_random.maf.gz 2004-08-03 11:52 654K
chr18.maf.gz 2004-08-03 11:54 74M
chr18_random.maf.gz 2004-08-03 11:54 699K
chr19.maf.gz 2004-08-03 11:56 52M
chr19_random.maf.gz 2004-08-03 11:56 371K
chrM.maf.gz 2004-08-03 12:23 29K
chrUn_random.maf.gz 2004-08-03 12:24 26M
chrX.maf.gz 2004-08-03 12:27 97M
chrX_random.maf.gz 2004-08-03 12:27 4.1M
chrY.maf.gz 2004-08-03 12:27 14M
chrY_random.maf.gz 2004-08-03 12:27 164K
md5sum.txt 2004-08-03 12:32 2.1K