This directory contains reciprocal-best netted chains for mm10-oreNil3.

 - mm10.oreNil3.rbest.net.gz: mm10-referenced recip.best net to oreNil3.
 - mm10.oreNil3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to oreNil3 through the recip.best net.

 - oreNil3.mm10.rbest.net.gz: oreNil3-referenced recip.best net.
 - oreNil3.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.oreNil3.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2017-08-02 04:17    -   
      md5sum.txt                  2017-08-02 00:13  244   
      oreNil3.mm10.rbest.chain.gz 2017-08-02 00:13  3.5M  
      mm10.oreNil3.rbest.chain.gz 2017-08-02 00:13  3.5M  
      mm10.oreNil3.rbest.net.gz   2017-08-02 00:13  5.9M  
      oreNil3.mm10.rbest.net.gz   2017-08-02 00:13  6.0M