This directory contains reciprocal-best netted chains for mm10-macNem1.

 - mm10.macNem1.rbest.net.gz: mm10-referenced recip.best net to macNem1.
 - mm10.macNem1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to macNem1 through the recip.best net.

 - macNem1.mm10.rbest.net.gz: macNem1-referenced recip.best net.
 - macNem1.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.macNem1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      mm10.macNem1.rbest.net.gz   2017-02-28 21:24   97M  
      mm10.macNem1.rbest.chain.gz 2017-02-28 21:22   64M  
      md5sum.txt                  2017-02-28 21:24  244   
      macNem1.mm10.rbest.net.gz   2017-02-28 21:20  138M  
      macNem1.mm10.rbest.chain.gz 2017-02-28 21:21   64M  
      axtRBestNet/                2017-03-01 03:01    -